Topics
- Background and Citations
- Database Statistics
- External references
- The PUMAdb system - specifics on hardware, RDBMS, and software
- Related Database Projects
PUMAdb is a project within the Lewis-Sigler Institute for
Integrative Genomics of Princeton University. PUMAdb is
based on the Stanford Microarray
Database (SMD) software package.
Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM,
Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F,
Zachariah ZK, Brown PO, Sherlock G
The Stanford Microarray Database accommodates additional microarray
platforms and data formats. Nucleic Acids Res 2005 Jan
1;33(1):D580-2
Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM,
Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown
PO, Botstein D, Sherlock G. The Stanford Microarray Database: data
access and quality assessment tools. Nucleic Acids Res 2003
Jan 1;31(1):94-6.
Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese
JC, Dwight SS, Kaloper M, Weng S, Jin H, Ball CA, Eisen MB, Spellman
PT, Brown PO, Botstein D, Cherry JM. The Stanford Microarray
Database. Nucleic Acids Res 2001 Jan 1;29(1):152-5.
The PUMAdb project is a collaboration with SMD, as mentioned above.
Most of the tools and software can referenced in the following SMD
publications:
Full text  |  PubMed
Full
text  |  PubMed
Full
text  |  PubMed
Database statistics
Various database statistics are available here
External references in the database
The external sources of biological annotation used in the database are
listed here.
The PUMAdb system
For comparison (and other suggestions), see SMD's
system