PUMAdb : Princeton University MicroArray database

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The Princeton University MicroArray database (PUMAdb) stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, PUMAdb provides interfaces for data retrieval, analysis and visualization.

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Princeton researchers and their collaborators should register for a database account. Data is released to the public at the researcher's discretion or upon publication. If you are a world user, and are just trying to reach viewable data, either view our publications page or activate a world session.

PUMA Access: Access to non-public data is limited to registered Princeton researchers and their collaborators. Please see PUMAdb Registration for more specific information. If you have further questions regarding access, please e-mail the Princeton Microarray Database curators.

Announcements

2009-10-22 : Plasmodium falciparum annotations updated to PlasmoDB 6.1.

2009-10-15 : New Array Designs Entered => "All 10mer" deBruijn sequence designs [Agilent-015681 and Agilent-016060]

2009-10-1 : New Array Design Entered => Agilent-019161 : Zebrafish (v2) Gene Expression Microarray

2009-09-21 : New Features added!

  • Collapse/average data by gene identifiers within the analysis pipeline
  • Download of original data files from archive
  • Improved parsing of GenePix results, enabling variable wavelengths


Recent Publications

2009-10-06 : Protein Kinase A and TORC1 Activate Genes for Ribosomal Biogenesis through Inactivation of Repressors Encoded by Dot6 and Its Homolog Tod6. Lippman SI and Broach JR (2009, in preparation).

2009-10-01 : Initiation of the TORC1-regulated G0 Program Requires Igo1 and Igo2, which License Quiescence-Specific mRNAs to Bypass Degradation in P-Bodies. Talarek et al (2009, in preparation)

2009-08-01 : Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae. Zawadzki KA, et al. (2009) Mol Biol Cell 20(15):3503-13

2009-07-03 : Condition-adapted stress and longevity gene regulation by Caenorhabditis elegans SKN-1/Nrf. Oliveira RP, et al. (2009) Aging Cell Jul 3.



Project Funding and Support: PUMAdb is funded in part by the National Institute of General Medical Sciences (NIGMS) [NIH grant P50 GM071508]. PUMAdb is a project within the Lewis-Sigler Institute for Integrative Genomics at Princeton University. Software and schema are based on the Stanford Microarray Database software package, and ongoing development remains a collaboration with this group.

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.