PUMAdb : Princeton University MicroArray database

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The Princeton University MicroArray database (PUMAdb) stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, PUMAdb provides interfaces for data retrieval, analysis and visualization. For mass spectrometry assays (proteomics and metabolomics), please visit the PUMPd project. For high-throughput sequencing assays, please visit the HTSEQ project.

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Princeton researchers and their collaborators should register for a database account. Data is released to the public at the researcher's discretion or upon publication. If you are a world user, and are just trying to reach viewable data, either view our publications page or activate a world session.

PUMA Access: Access to non-public data is limited to registered Princeton researchers and their collaborators. Please see PUMAdb Registration for more specific information. If you have further questions regarding access, please e-mail the Princeton Microarray Database curators.

Announcements

2013-03-01 : New Array Design Entered => "Agilent-026652:Whole Human Genome Microarray 4x44K v2" in both DNABack-BCLeft and DNAFront-BCBottom orientations (for Axon/Molecular Dynamics scanner)

2012-12-20 : New Array Design Entered => "Agilent-028005:SurePrint G3 Mouse GE 8x60K Microarray"

2012-11-21 : New Array Design Entered => "Affymetrix Human Genome U133A v2"

2012-11-05 : New Array Design Entered => "Agilent-039494:SurePrint G3 Human GE v2 8x60K Microarray"


Recent Publications

2013-06-01 : Stability, specificity, and functional determinants of the Vibrio harveyi quorum-sensing non-coding RNAs and analysis of their roles in mRNA target selection and regulation Shao et al. 2013 Stability, specificity, and functional determinants of the Vibrio harveyi quorum-sensing non-coding RNAs and analysis of their roles in mRNA target selection and regulation [Submitted]

2013-02-23 : Design and use of multiplexed chemostat arrays. Miller AW, et al. (2013) J Vis Exp (72):e50262

2013-02-01 : Individual and Combined Roles of the Master Regulators AphA and LuxR in Control of the Vibrio harveyi Quorum-Sensing Regulon. van Kessel JC, et al. (2013) J Bacteriol 195(3):436-43

2012-12-01 : High Hydrostatic Pressure Activates Transcription Factors Involved in Saccharomyces cerevisiae Stress Tolerance. Bravim F, et al. (2012) Curr Pharm Biotechnol 13(15):2712-20



Project Funding and Support: PUMAdb is funded in part by the National Institute of General Medical Sciences (NIGMS) [NIH grant P50 GM071508]. PUMAdb is a project within the Lewis-Sigler Institute for Integrative Genomics at Princeton University. Software and schema are based on the Stanford Microarray Database software package, and ongoing development remains a collaboration with this group.

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.