PUMAdb : Princeton University MicroArray database

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The Princeton University MicroArray database (PUMAdb) stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, PUMAdb provides interfaces for data retrieval, analysis and visualization. For mass spectrometry assays (proteomics and metabolomics), please visit the PUMPd project. For high-throughput sequencing assays, please visit the HTSEQ project.

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Princeton researchers and their collaborators should register for a database account. Data is released to the public at the researcher's discretion or upon publication. If you are a world user, and are just trying to reach viewable data, either view our publications page or activate a world session.

PUMA Access: Access to non-public data is limited to registered Princeton researchers and their collaborators. Please see PUMAdb Registration for more specific information. If you have further questions regarding access, please e-mail the Princeton Microarray Database curators.

Announcements

Scheduled downtime! The PUMA project has some upcoming scheduled downtime, so that we may update our system's hardware.

  1. NO ACCESS Saturday-Sunday April 26-27, while the database is being synchronized and configured
  2. READ-ONLY ACCESS Monday, April 28, for our final deployment check
Please accept our apologies for any inconvenience this might cause. Please let us know immediately if this conflicts with either class projects or other important research deadlines.

2013-10-17 : S. cerevisiae annotations updated using SGD release R64-1-1, with improved GO annotations.

2013-09-23 : Caenorhabditis elegans annotations updated using WormBase v238.

2013-06-13 : Caenorhabditis elegans annotations updated using WormBase v237.


Recent Publications

2014-04-01 : Mediator in chromatin exists in multiple forms and is associated to promoters with low nucleosome density Elving et al 2014. (Submitted)

2014-03-01 : The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection. Payen C, et al. (2014) G3 4(3):399-409

2013-10-29 : A quorum-sensing inhibitor blocks Pseudomonas aeruginosa virulence and biofilm formation. O'Loughlin CT, et al. (2013) Proc Natl Acad Sci U S A 110(44):17981-6

2013-09-01 : A new system for comparative functional genomics of Saccharomyces yeasts. Caudy AA, et al. (2013) Genetics 195(1):275-87



Project Funding and Support: PUMAdb is funded in part by the National Institute of General Medical Sciences (NIGMS) [NIH grant P50 GM071508]. PUMAdb is a project within the Lewis-Sigler Institute for Integrative Genomics at Princeton University. Software and schema are based on the Stanford Microarray Database software package, and ongoing development remains a collaboration with this group.

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.