PUMAdb : Princeton University MicroArray database

The Princeton University MicroArray database (PUMAdb) stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, PUMAdb provides interfaces for data retrieval, analysis and visualization. For mass spectrometry assays (proteomics and metabolomics), please visit the PUMPd project. For high-throughput sequencing assays, please visit the HTSEQ project.

Researcher Login

Princeton researchers and their collaborators should register for a database account. Data is released to the public at the researcher's discretion or upon publication. If you are a world user, and are just trying to reach viewable data, either view our publications page or activate a world session.

PUMA Access: Access to non-public data is limited to registered Princeton researchers and their collaborators. Please see PUMAdb Registration for more specific information. If you have further questions regarding access, please e-mail the Princeton Microarray Database curators.

Announcements

2012-01-18 : Extended PCL format added as a download option within the data retrieval pipeline..

2011-05-09 : Saccharomyces cerevisiae annotations updated. See the latest list of annotation changes based on transcript and genomic BLAST results.

2011-04-29 : Bacteroides fragilis NCTC 9343 print and annotations added.

2011-02-10 : New Array Design Entered => "SurePrint G3 Human GE 8x60K Microarray" [Agilent-028004]

Recent Publications

2012-03-01 : Mapping the Centromeric Heterochromatin by Comparative Genomic Hybridization Analysis and Chromosome Deletions in Drosophila Melanogaster Bing H, et al. Genome Research. 2012. Submitted.

2011-09-01 : The Evolutionarily Conserved Longevity Determinants HCF-1 and SIR-2.1/SIRT1 Collaborate to Regulate DAF-16/FOXO. Rizki G, et al. (2011) PLoS Genet 7(9):e1002235

2011-02-15 : Yeast cells can access distinct quiescent states. Klosinska MM, et al. (2011) Genes Dev 25(4):336-49

2011-02-15 : AphA and LuxR/HapR reciprocally control quorum sensing in vibrios. Rutherford ST, et al. (2011) Genes Dev 25(4):397-408

Project Funding and Support: PUMAdb is funded in part by the National Institute of General Medical Sciences (NIGMS) [NIH grant P50 GM071508]. PUMAdb is a project within the Lewis-Sigler Institute for Integrative Genomics at Princeton University. Software and schema are based on the Stanford Microarray Database software package, and ongoing development remains a collaboration with this group.

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.